To reproduce the plots in the paper:

- Download the relevant .Rmd R notebook files (organized by figure number in the article)
- Download the file utils.R and place it in the same directory as the .Rmd file(s) of interest
- Download the dists.tar.gz file and unzip into the same directory as the .Rmd file(s). This directory contains two small text files that contain the published experimentally-derived single cell fitness data used in our analysis.
- Download the relevant datasets from this repository (figure numbers are in the data descriptions, or look in the .Rmd file(s) for which files are loaded) and unzip into the same directory as the .Rmd file(s). You can now run the R notebook scripts interactively in RStudio.

revised 8/14/18 by Debra Van Egeren